J3_5T2A_017
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5T2A|1|B|A|1066
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_017 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.14
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|B|C|1027
5T2A|1|B|U|1028
5T2A|1|B|C|1029
*
5T2A|1|B|G|1053
5T2A|1|B|A|1054
5T2A|1|B|A|1055
*
5T2A|1|B|U|1064
5T2A|1|B|A|1065
5T2A|1|B|A|1066
5T2A|1|B|A|1067
5T2A|1|B|A|1068
5T2A|1|B|G|1069
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain K
- uL5
- Chain S
- eL21
- Chain s
- uL18
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