J3_5T2A_030
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAAG*CC*GA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_030 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.1264
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|A|U|410
5T2A|1|A|U|411
5T2A|1|A|G|412
5T2A|1|A|A|413
5T2A|1|A|A|414
5T2A|1|A|A|415
5T2A|1|A|A|416
5T2A|1|A|G|417
*
5T2A|1|A|C|444
5T2A|1|A|C|445
*
5T2A|1|C|G|109
5T2A|1|C|A|110
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain X
- uL24
- Chain o
- eL39
- Chain p
- uL4
Coloring options: