J3_5T2A_031
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAAGCAC*GAGUGAAAUAGAACC*GA
- Length
- 28 nucleotides
- Bulged bases
- 5T2A|1|A|U|439, 5T2A|1|A|A|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_031 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.2607
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5T2A|1|A|U|410
5T2A|1|A|U|411
5T2A|1|A|G|412
5T2A|1|A|A|413
5T2A|1|A|A|414
5T2A|1|A|A|415
5T2A|1|A|A|416
5T2A|1|A|G|417
5T2A|1|A|C|418
5T2A|1|A|A|419
5T2A|1|A|C|420
*
5T2A|1|A|G|431
5T2A|1|A|A|432
5T2A|1|A|G|433
5T2A|1|A|U|434
5T2A|1|A|G|435
5T2A|1|A|A|436
5T2A|1|A|A|437
5T2A|1|A|A|438
5T2A|1|A|U|439
5T2A|1|A|A|440
5T2A|1|A|G|441
5T2A|1|A|A|442
5T2A|1|A|A|443
5T2A|1|A|C|444
5T2A|1|A|C|445
*
5T2A|1|C|G|109
5T2A|1|C|A|110
Current chains
- Chain A
- LSU-alpha
- Chain C
- 5.8S rRNA
Nearby chains
- Chain G
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- uL22
- Chain X
- uL24
- Chain o
- eL39
- Chain p
- uL4
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