J3_5T2A_039
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCACAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 5T2A|1|D|C|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2A_039 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1106
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T2A|1|D|C|10
5T2A|1|D|C|11
5T2A|1|D|A|12
5T2A|1|D|C|13
5T2A|1|D|A|14
5T2A|1|D|C|15
*
5T2A|1|D|G|66
5T2A|1|D|G|67
*
5T2A|1|D|U|110
5T2A|1|D|G|111
Current chains
- Chain D
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- uL16
- Chain K
- uL5
- Chain S
- eL21
- Chain s
- uL18
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