J3_5T2A_043

3D structure

PDB id

5T2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUUGG*CGAGAU*GCAACA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T2A_043 not in the Motif Atlas

Homologous match to J3_8P9A_080

Geometric discrepancy: 0.3474

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17077.1

Basepair signature

cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5T2A|1|2|U|1637
5T2A|1|2|U|1638
5T2A|1|2|U|1639
5T2A|1|2|U|1640
5T2A|1|2|G|1641
5T2A|1|2|G|1642
*
5T2A|1|2|C|1681
5T2A|1|2|G|1682
5T2A|1|2|A|1683
5T2A|1|2|G|1684
5T2A|1|2|A|1685
5T2A|1|2|U|1686
*
5T2A|1|2|G|1822
5T2A|1|2|C|1823
5T2A|1|2|A|1824
5T2A|1|2|A|1825
5T2A|1|2|C|1826
5T2A|1|2|A|1827

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 8

uS14

Chain AK

uS9

Chain AL

eS17

Chain AP

uS5

Chain AQ

uS10

Chain AX

uS3