J3_5T2C_001

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

5T2C|1|A|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5T2C|1|A|C|112
5T2C|1|A|A|113
5T2C|1|A|G|114
5T2C|1|A|C|115
5T2C|1|A|G|116
*
5T2C|1|A|C|155
5T2C|1|A|G|156
5T2C|1|A|U|157
5T2C|1|A|A|158
5T2C|1|A|C|159
5T2C|1|A|G|160
*
5T2C|1|A|C|275
5T2C|1|A|C|276
5T2C|1|A|G|277
5T2C|1|A|G|278

Current chains

Chain A

28S rRNA

Nearby chains

Chain b

60S ribosomal protein L35

Chain c

60S ribosomal protein L36

Chain n

60S ribosomal protein L7a

Chain r

60S ribosomal protein L13

Chain t

60S ribosomal protein L15