J3_5T2C_009

3D structure

PDB id

5T2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human ribosome at 3.6 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T2C_009 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.3766

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

5T2C|1|A|C|3937
5T2C|1|A|G|3938
5T2C|1|A|G|3939
*
5T2C|1|A|C|4074
5T2C|1|A|U|4075
5T2C|1|A|G|4076
5T2C|1|A|A|4077
5T2C|1|A|C|4078
*
5T2C|1|A|G|4168
5T2C|1|A|G|4169
5T2C|1|A|A|4170
5T2C|1|A|C|4171
5T2C|1|A|A|4172
5T2C|1|A|G|4173

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain n

60S ribosomal protein L7a

Chain t

60S ribosomal protein L15