J3_5T2C_022
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 5T2C|1|A|G|409, 5T2C|1|A|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2C_022 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3239
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5T2C|1|A|U|380
5T2C|1|A|U|381
5T2C|1|A|G|382
5T2C|1|A|A|383
5T2C|1|A|A|384
5T2C|1|A|A|385
5T2C|1|A|A|386
5T2C|1|A|G|387
5T2C|1|A|A|388
5T2C|1|A|A|389
5T2C|1|A|C|390
*
5T2C|1|A|G|401
5T2C|1|A|A|402
5T2C|1|A|G|403
5T2C|1|A|U|404
5T2C|1|A|U|405
5T2C|1|A|C|406
5T2C|1|A|A|407
5T2C|1|A|A|408
5T2C|1|A|G|409
5T2C|1|A|A|410
5T2C|1|A|G|411
5T2C|1|A|G|412
5T2C|1|A|G|413
5T2C|1|A|C|414
5T2C|1|A|G|415
*
5T2C|1|C|C|19
5T2C|1|C|A|20
Current chains
- Chain A
- 28S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
- Chain S
- 60S ribosomal protein L26
- Chain f
- 60S ribosomal protein L39
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