J3_5T2C_028
3D structure
- PDB id
- 5T2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the human ribosome at 3.6 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 5T2C|1|A|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T2C_028 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.1087
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5T2C|1|A|G|4228
5T2C|1|A|U|4229
5T2C|1|A|C|4230
*
5T2C|1|A|G|4331
5T2C|1|A|C|4332
5T2C|1|A|C|4333
5T2C|1|A|U|4334
5T2C|1|A|C|4335
5T2C|1|A|A|4336
5T2C|1|A|C|4337
5T2C|1|A|G|4338
5T2C|1|A|A|4339
5T2C|1|A|U|4340
5T2C|1|A|C|4341
5T2C|1|A|C|4342
*
5T2C|1|A|G|4370
5T2C|1|A|G|4371
5T2C|1|A|U|4372
5T2C|1|A|G|4373
5T2C|1|A|U|4374
5T2C|1|A|C|4375
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain An
- Transfer RNA; tRNA
- Chain K
- 60S ribosomal protein L18
- Chain N
- 60S ribosomal protein L21
- Chain U
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36a
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