J3_5T62_010

3D structure

PDB id

5T62 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

5T62|1|A|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T62_010 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1667

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5T62|1|A|C|1631
5T62|1|A|A|1632
*
5T62|1|A|U|1641
5T62|1|A|A|1642
5T62|1|A|A|1643
5T62|1|A|C|1644
5T62|1|A|U|1645
*
5T62|1|A|A|1810
5T62|1|A|G|1811

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain m

60S ribosomal protein L27-A

Chain t

60S ribosomal protein L34-A