J3_5T62_027
3D structure
- PDB id
- 5T62 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 5T62|1|C|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T62_027 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.0851
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
5T62|1|C|A|44
5T62|1|C|C|45
*
5T62|1|C|G|58
5T62|1|C|A|59
5T62|1|C|U|60
5T62|1|C|A|61
5T62|1|C|C|62
5T62|1|C|G|63
5T62|1|C|U|64
*
5T62|1|C|A|96
5T62|1|C|A|97
5T62|1|C|U|98
5T62|1|C|C|99
5T62|1|C|U|100
Current chains
- Chain C
- 5.8S Ribosomal RNA
Nearby chains
- Chain k
- 60S ribosomal protein L25
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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