J3_5T6R_003

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5T6R|1|A|A|817, 5T6R|1|A|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T6R_003 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.0826

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5T6R|1|A|U|814
5T6R|1|A|G|815
5T6R|1|A|A|816
5T6R|1|A|A|817
5T6R|1|A|C|818
5T6R|1|A|U|819
5T6R|1|A|A|820
*
5T6R|1|A|U|905
5T6R|1|A|A|906
5T6R|1|A|G|907
*
5T6R|1|A|C|923
5T6R|1|A|G|924
5T6R|1|A|A|925
5T6R|1|A|A|926

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain a

60S ribosomal protein L15-A

Chain w

60S ribosomal protein L37-A