J3_5T6R_006

3D structure

PDB id

5T6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

5T6R|1|A|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T6R_006 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0931

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

5T6R|1|A|U|1479
5T6R|1|A|G|1480
5T6R|1|A|A|1481
5T6R|1|A|A|1482
5T6R|1|A|G|1483
5T6R|1|A|U|1484
5T6R|1|A|G|1485
*
5T6R|1|A|C|1857
5T6R|1|A|A|1858
5T6R|1|A|A|1859
*
5T6R|1|A|U|1871
5T6R|1|A|C|1872
5T6R|1|A|U|1873
5T6R|1|A|A|1874

Current chains

Chain A

25S Ribosomal RNA

Nearby chains

Chain e

60S ribosomal protein L19-A

Chain t

60S ribosomal protein L34-A