J3_5T6R_012
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5T6R|1|A|A|2703, 5T6R|1|A|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T6R_012 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.099
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5T6R|1|A|C|2664
5T6R|1|A|U|2665
5T6R|1|A|C|2666
*
5T6R|1|A|G|2690
5T6R|1|A|A|2691
5T6R|1|A|A|2692
*
5T6R|1|A|U|2701
5T6R|1|A|A|2702
5T6R|1|A|A|2703
5T6R|1|A|A|2704
5T6R|1|A|A|2705
5T6R|1|A|G|2706
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-A
- Chain g
- 60S ribosomal protein L21-A
Coloring options: