J3_5T6R_013
3D structure
- PDB id
- 5T6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 5T6R|1|A|A|2887, 5T6R|1|A|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5T6R_013 not in the Motif Atlas
- Homologous match to J3_5TBW_014
- Geometric discrepancy: 0.0898
- The information below is about J3_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5T6R|1|A|U|2886
5T6R|1|A|A|2887
5T6R|1|A|U|2888
5T6R|1|A|C|2889
*
5T6R|1|A|G|2914
5T6R|1|A|U|2915
5T6R|1|A|U|2916
*
5T6R|1|A|A|2930
5T6R|1|A|C|2931
5T6R|1|A|U|2932
5T6R|1|A|A|2933
5T6R|1|A|A|2934
5T6R|1|A|U|2935
5T6R|1|A|A|2936
Current chains
- Chain A
- 25S Ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain b
- 60S ribosomal protein L16-A
- Chain i
- 60S ribosomal protein L23-A
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