J3_5T7V_004

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

5T7V|1|A|U|880, 5T7V|1|A|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5T7V_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.2175

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

5T7V|1|A|C|834
5T7V|1|A|U|835
5T7V|1|A|A|836
5T7V|1|A|A|837
*
5T7V|1|A|U|866
5T7V|1|A|G|867
5T7V|1|A|C|868
5T7V|1|A|A|869
5T7V|1|A|G|870
*
5T7V|1|A|C|877
5T7V|1|A|A|878
5T7V|1|A|U|879
5T7V|1|A|U|880
5T7V|1|A|A|881
5T7V|1|A|A|882
5T7V|1|A|G|883

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain SF

30S ribosomal protein S8