3D structure

PDB id
5T7V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
5T7V|1|B|U|494, 5T7V|1|B|C|502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5T7V_024 not in the Motif Atlas
Homologous match to J3_4WF9_012
Geometric discrepancy: 0.1758
The information below is about J3_4WF9_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

5T7V|1|B|C|32
5T7V|1|B|U|33
5T7V|1|B|U|34
5T7V|1|B|G|35
*
5T7V|1|B|C|491
5T7V|1|B|G|492
5T7V|1|B|A|493
5T7V|1|B|U|494
5T7V|1|B|A|495
5T7V|1|B|G|496
5T7V|1|B|U|497
5T7V|1|B|G|498
5T7V|1|B|A|499
5T7V|1|B|A|500
5T7V|1|B|C|501
5T7V|1|B|C|502
5T7V|1|B|A|503
5T7V|1|B|G|504
5T7V|1|B|U|505
5T7V|1|B|A|506
5T7V|1|B|C|507
*
5T7V|1|B|G|514
5T7V|1|B|G|515
5T7V|1|B|A|516
5T7V|1|B|A|517
5T7V|1|B|A|518
5T7V|1|B|G|519

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain L3
50S ribosomal protein L20
Chain L6
50S ribosomal protein L23
Chain LG
50S ribosomal protein L34
Chain LJ
50S ribosomal protein L4

Coloring options:


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