J3_5TCU_006

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5TCU|1|A|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_006 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2596

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5TCU|1|A|C|1000
5TCU|1|A|U|1001
5TCU|1|A|U|1002
5TCU|1|A|G|1003
*
5TCU|1|A|C|1057
5TCU|1|A|A|1058
5TCU|1|A|G|1059
*
5TCU|1|A|C|1221
5TCU|1|A|U|1222
5TCU|1|A|U|1223
5TCU|1|A|A|1224
5TCU|1|A|U|1225
5TCU|1|A|G|1226

Current chains

Chain A

16S RRNA

Nearby chains

Chain S5

30S ribosomal protein S14 type Z