J3_5TCU_010

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_010 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1639

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5TCU|1|B|G|30
5TCU|1|B|C|31
*
5TCU|1|B|G|520
5TCU|1|B|U|521
5TCU|1|B|G|522
5TCU|1|B|A|523
5TCU|1|B|A|524
5TCU|1|B|A|525
5TCU|1|B|A|526
5TCU|1|B|G|527
*
5TCU|1|B|C|554
5TCU|1|B|C|555

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain L7

50S ribosomal protein L24