J3_5TCU_021

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_021 not in the Motif Atlas

Homologous match to J3_4WF9_020

Geometric discrepancy: 0.1691

The information below is about J3_4WF9_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5TCU|1|B|C|2816
5TCU|1|B|A|2817
*
5TCU|1|B|U|2826
5TCU|1|B|A|2827
5TCU|1|B|U|2828
5TCU|1|B|A|2829
5TCU|1|B|A|2830
5TCU|1|B|G|2831
*
5TCU|1|B|C|2909
5TCU|1|B|G|2910
5TCU|1|B|A|2911
5TCU|1|B|A|2912
5TCU|1|B|G|2913

Current chains

Chain B

23S RRNA

Nearby chains

Chain LC

50S ribosomal protein L3