J3_5TCU_044

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

5TCU|1|A|A|1113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TCU_044 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.4709

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5TCU|1|A|U|1085
5TCU|1|A|G|1086
*
5TCU|1|A|U|1095
5TCU|1|A|G|1096
5TCU|1|A|U|1097
5TCU|1|A|U|1098
5TCU|1|A|G|1099
*
5TCU|1|A|C|1110
5TCU|1|A|G|1111
5TCU|1|A|C|1112
5TCU|1|A|A|1113
5TCU|1|A|A|1114

Current chains

Chain A

16S RRNA

Nearby chains

Chain SD

30S ribosomal protein S5