J3_5TCU_047
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGAAU*AAUCAAAGAA*UGUAG
- Length
- 20 nucleotides
- Bulged bases
- 5TCU|1|B|A|364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_047 not in the Motif Atlas
- Homologous match to J3_4WF9_015
- Geometric discrepancy: 0.13
- The information below is about J3_4WF9_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5TCU|1|B|C|340
5TCU|1|B|G|341
5TCU|1|B|A|342
5TCU|1|B|A|343
5TCU|1|B|U|344
*
5TCU|1|B|A|359
5TCU|1|B|A|360
5TCU|1|B|U|361
5TCU|1|B|C|362
5TCU|1|B|A|363
5TCU|1|B|A|364
5TCU|1|B|A|365
5TCU|1|B|G|366
5TCU|1|B|A|367
5TCU|1|B|A|368
*
5TCU|1|B|U|380
5TCU|1|B|G|381
5TCU|1|B|U|382
5TCU|1|B|A|383
5TCU|1|B|G|384
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain L7
- 50S ribosomal protein L24
- Chain LJ
- 50S ribosomal protein L4
Coloring options: