J3_5TCU_052
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 5TCU|1|B|U|2361, 5TCU|1|B|A|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5TCU_052 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1952
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
5TCU|1|B|C|2322
5TCU|1|B|U|2323
5TCU|1|B|C|2324
*
5TCU|1|B|G|2348
5TCU|1|B|A|2349
5TCU|1|B|G|2350
*
5TCU|1|B|C|2359
5TCU|1|B|A|2360
5TCU|1|B|U|2361
5TCU|1|B|A|2362
5TCU|1|B|A|2363
5TCU|1|B|G|2364
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain E
- Transfer RNA; tRNA
- Chain L9
- 50S ribosomal protein L27
- Chain LK
- 50S ribosomal protein L5
- Chain LR
- 50S ribosomal protein L18
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