J3_5TGA_052

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

5TGA|1|6|G|1199, 5TGA|1|6|G|1201, 5TGA|1|6|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TGA_052 not in the Motif Atlas

Homologous match to J3_8P9A_078

Geometric discrepancy: 0.0817

The information below is about J3_8P9A_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5TGA|1|6|C|1180
5TGA|1|6|U|1181
5TGA|1|6|U|1182
5TGA|1|6|A|1183
5TGA|1|6|A|1184
5TGA|1|6|U|1185
5TGA|1|6|U|1186
5TGA|1|6|U|1187
*
5TGA|1|6|G|1198
5TGA|1|6|G|1199
5TGA|1|6|G|1200
5TGA|1|6|G|1201
5TGA|1|6|A|1202
5TGA|1|6|A|1203
5TGA|1|6|A|1204
5TGA|1|6|C|1205
5TGA|1|6|U|1206
5TGA|1|6|C|1207
5TGA|1|6|A|1208
5TGA|1|6|C|1209
*
5TGA|1|6|G|1454
5TGA|1|6|G|1455
5TGA|1|6|C|1456
5TGA|1|6|C|1457
5TGA|1|6|G|1458

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain c8

40S ribosomal protein S18-A

Chain d0

40S ribosomal protein S20

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Ribosome-bound protein Stm1