J3_5TGM_020

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TGM_020 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1344

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5TGM|1|2|C|1144
5TGM|1|2|C|1145
5TGM|1|2|A|1146
5TGM|1|2|G|1147
*
5TGM|1|2|C|1564
5TGM|1|2|U|1565
5TGM|1|2|A|1566
5TGM|1|2|G|1567
5TGM|1|2|U|1568
5TGM|1|2|A|1569
5TGM|1|2|A|1570
*
5TGM|1|2|U|1592
5TGM|1|2|G|1593
5TGM|1|2|A|1594
5TGM|1|2|U|1595
5TGM|1|2|U|1596
5TGM|1|2|A|1597
5TGM|1|2|C|1598
5TGM|1|2|G|1599

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C6

40S ribosomal protein S16-A

Chain D8

40S ribosomal protein S28-A

Chain S5

40S ribosomal protein S5