J3_5TGM_023

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

5TGM|1|2|A|1200, 5TGM|1|2|G|1428, 5TGM|1|2|C|1430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5TGM_023 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1166

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

5TGM|1|2|C|1198
5TGM|1|2|C|1199
5TGM|1|2|A|1200
5TGM|1|2|G|1201
5TGM|1|2|A|1202
5TGM|1|2|C|1203
*
5TGM|1|2|G|1246
5TGM|1|2|G|1247
5TGM|1|2|G|1248
5TGM|1|2|U|1249
5TGM|1|2|G|1250
*
5TGM|1|2|U|1425
5TGM|1|2|U|1426
5TGM|1|2|A|1427
5TGM|1|2|G|1428
5TGM|1|2|A|1429
5TGM|1|2|C|1430
5TGM|1|2|G|1431

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A,40S Ribosomal Protein S10

Chain D9

40S ribosomal protein S29-A

Chain E1

Ubiquitin-40S ribosomal protein S31