J3_5U4I_008

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U4I_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.5559

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5U4I|1|A|U|1344
5U4I|1|A|C|1345
5U4I|1|A|G|1346
5U4I|1|A|A|1347
5U4I|1|A|C|1348
5U4I|1|A|C|1349
5U4I|1|A|C|1350
*
5U4I|1|A|G|1381
5U4I|1|A|G|1382
5U4I|1|A|A|1383
5U4I|1|A|A|1384
5U4I|1|A|A|1385
*
5U4I|1|A|U|1402
5U4I|1|A|A|1403

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain U

50S ribosomal protein L23