J3_5U4I_025

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U4I_025 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.1941

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5U4I|1|a|U|1073
5U4I|1|a|G|1074
*
5U4I|1|a|U|1083
5U4I|1|a|G|1084
5U4I|1|a|U|1085
5U4I|1|a|U|1086
5U4I|1|a|G|1087
*
5U4I|1|a|C|1098
5U4I|1|a|G|1099
5U4I|1|a|C|1100
5U4I|1|a|A|1101
5U4I|1|a|A|1102

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5