J3_5U9F_030

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U9F_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0944

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5U9F|1|01|G|1424
5U9F|1|01|G|1425
5U9F|1|01|G|1426
5U9F|1|01|A|1427
5U9F|1|01|C|1428
5U9F|1|01|G|1429
*
5U9F|1|01|C|1564
5U9F|1|01|C|1565
*
5U9F|1|01|G|1568
5U9F|1|01|A|1569
5U9F|1|01|A|1570
5U9F|1|01|A|1571
5U9F|1|01|A|1572
5U9F|1|01|G|1573
5U9F|1|01|C|1574

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2