J3_5U9F_034
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 5U9F|1|A|U|1212, 5U9F|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5U9F_034 not in the Motif Atlas
- Homologous match to J3_4LFB_016
- Geometric discrepancy: 0.191
- The information below is about J3_4LFB_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5U9F|1|A|C|990
5U9F|1|A|U|991
5U9F|1|A|U|992
5U9F|1|A|G|993
5U9F|1|A|A|994
5U9F|1|A|C|995
5U9F|1|A|A|996
5U9F|1|A|U|997
*
5U9F|1|A|A|1044
5U9F|1|A|C|1045
5U9F|1|A|A|1046
5U9F|1|A|G|1047
*
5U9F|1|A|C|1210
5U9F|1|A|U|1211
5U9F|1|A|U|1212
5U9F|1|A|A|1213
5U9F|1|A|C|1214
5U9F|1|A|G|1215
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
- Chain Z
- Peptide chain release factor RF2
Coloring options: