3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
5U9F|1|A|U|1212, 5U9F|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9F_034 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.191
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

5U9F|1|A|C|990
5U9F|1|A|U|991
5U9F|1|A|U|992
5U9F|1|A|G|993
5U9F|1|A|A|994
5U9F|1|A|C|995
5U9F|1|A|A|996
5U9F|1|A|U|997
*
5U9F|1|A|A|1044
5U9F|1|A|C|1045
5U9F|1|A|A|1046
5U9F|1|A|G|1047
*
5U9F|1|A|C|1210
5U9F|1|A|U|1211
5U9F|1|A|U|1212
5U9F|1|A|A|1213
5U9F|1|A|C|1214
5U9F|1|A|G|1215

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain N
30S ribosomal protein S14
Chain Z
Peptide chain release factor RF2

Coloring options:


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