J3_5U9G_006

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

5U9G|1|01|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U9G_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1534

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5U9G|1|01|C|1298
5U9G|1|01|G|1299
5U9G|1|01|G|1300
5U9G|1|01|A|1301
5U9G|1|01|A|1302
5U9G|1|01|G|1303
*
5U9G|1|01|C|1625
5U9G|1|01|A|1626
5U9G|1|01|G|1627
*
5U9G|1|01|C|1639
5U9G|1|01|A|1640
5U9G|1|01|A|1641
5U9G|1|01|G|1642

Current chains

Chain 01

23S ribosomal RNA

Nearby chains