3D structure

PDB id
5U9G (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
5U9G|1|A|U|1240, 5U9G|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5U9G_026 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1943
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

5U9G|1|A|C|1237
5U9G|1|A|A|1238
5U9G|1|A|A|1239
5U9G|1|A|U|1240
5U9G|1|A|G|1241
*
5U9G|1|A|C|1296
5U9G|1|A|G|1297
5U9G|1|A|U|1298
5U9G|1|A|A|1299
5U9G|1|A|G|1300
5U9G|1|A|U|1301
5U9G|1|A|C|1302
5U9G|1|A|C|1303
*
5U9G|1|A|G|1334
5U9G|1|A|U|1335
5U9G|1|A|C|1336
5U9G|1|A|G|1337

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain X
Transfer RNA; tRNA

Coloring options:


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