J3_5U9G_030

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5U9G_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1001

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5U9G|1|01|G|1424
5U9G|1|01|G|1425
5U9G|1|01|G|1426
5U9G|1|01|A|1427
5U9G|1|01|C|1428
5U9G|1|01|G|1429
*
5U9G|1|01|C|1564
5U9G|1|01|C|1565
*
5U9G|1|01|G|1568
5U9G|1|01|A|1569
5U9G|1|01|A|1570
5U9G|1|01|A|1571
5U9G|1|01|A|1572
5U9G|1|01|G|1573
5U9G|1|01|C|1574

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2