J3_5UQ7_019
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 5UQ7|1|a|U|871, 5UQ7|1|a|A|873
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ7_019 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.0887
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5UQ7|1|a|C|826
5UQ7|1|a|U|827
5UQ7|1|a|A|828
5UQ7|1|a|G|829
*
5UQ7|1|a|C|857
5UQ7|1|a|G|858
5UQ7|1|a|A|859
5UQ7|1|a|A|860
5UQ7|1|a|G|861
*
5UQ7|1|a|C|868
5UQ7|1|a|G|869
5UQ7|1|a|U|870
5UQ7|1|a|U|871
5UQ7|1|a|A|872
5UQ7|1|a|A|873
5UQ7|1|a|G|874
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
Coloring options: