J3_5UQ8_002
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 5UQ8|1|A|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UQ8_002 not in the Motif Atlas
- Homologous match to J3_7RQB_002
- Geometric discrepancy: 0.1052
- The information below is about J3_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84625.2
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UQ8|1|A|A|56
5UQ8|1|A|C|57
*
5UQ8|1|A|G|70
5UQ8|1|A|A|71
5UQ8|1|A|U|72
5UQ8|1|A|A|73
5UQ8|1|A|A|74
5UQ8|1|A|G|75
5UQ8|1|A|C|76
*
5UQ8|1|A|G|110
5UQ8|1|A|A|111
5UQ8|1|A|U|112
5UQ8|1|A|G|113
5UQ8|1|A|U|114
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L29
- Chain 7
- 50S ribosomal protein L34
- Chain X
- 50S ribosomal protein L23
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