J3_5UQ8_004

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

5UQ8|1|A|G|686, 5UQ8|1|A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0977

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|C|683
5UQ8|1|A|G|684
5UQ8|1|A|A|685
5UQ8|1|A|G|686
5UQ8|1|A|C|687
5UQ8|1|A|U|688
5UQ8|1|A|A|689
*
5UQ8|1|A|U|773
5UQ8|1|A|A|774
5UQ8|1|A|G|775
*
5UQ8|1|A|C|791
5UQ8|1|A|G|792
5UQ8|1|A|A|793
5UQ8|1|A|G|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2