J3_5UQ8_007

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_007 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0804

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|C|1298
5UQ8|1|A|G|1299
5UQ8|1|A|U|1300
5UQ8|1|A|A|1301
5UQ8|1|A|A|1302
5UQ8|1|A|G|1303
*
5UQ8|1|A|C|1625
5UQ8|1|A|G|1626
5UQ8|1|A|G|1627
*
5UQ8|1|A|U|1639
5UQ8|1|A|C|1640
5UQ8|1|A|A|1641
5UQ8|1|A|G|1642

Current chains

Chain A

23S rRNA

Nearby chains