J3_5UQ8_009

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0984

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5UQ8|1|A|G|1344
5UQ8|1|A|C|1345
5UQ8|1|A|G|1346
5UQ8|1|A|G|1347
5UQ8|1|A|G|1348
5UQ8|1|A|A|1349
5UQ8|1|A|C|1350
*
5UQ8|1|A|G|1381
5UQ8|1|A|G|1382
5UQ8|1|A|C|1383
5UQ8|1|A|A|1384
5UQ8|1|A|G|1385
*
5UQ8|1|A|C|1402
5UQ8|1|A|C|1403

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23