3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUC*GAG*UAGAAG
Length
12 nucleotides
Bulged bases
5UQ8|1|A|G|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UQ8_012 not in the Motif Atlas
Homologous match to J3_7RQB_011
Geometric discrepancy: 0.1005
The information below is about J3_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.4
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5UQ8|1|A|C|2295
5UQ8|1|A|U|2296
5UQ8|1|A|C|2297
*
5UQ8|1|A|G|2321
5UQ8|1|A|A|2322
5UQ8|1|A|G|2323
*
5UQ8|1|A|U|2332
5UQ8|1|A|A|2333
5UQ8|1|A|G|2334
5UQ8|1|A|A|2335
5UQ8|1|A|A|2336
5UQ8|1|A|G|2337

Current chains

Chain A
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L27
Chain B
5S ribosomal RNA; 5S rRNA
Chain G
50S ribosomal protein L5
Chain S
50S ribosomal protein L18
Chain y
Transfer RNA; tRNA

Coloring options:


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