J3_5UQ8_013

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5UQ8|1|A|A|2518, 5UQ8|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_013 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.1195

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|C|2517
5UQ8|1|A|A|2518
5UQ8|1|A|U|2519
5UQ8|1|A|C|2520
*
5UQ8|1|A|G|2545
5UQ8|1|A|U|2546
5UQ8|1|A|U|2547
*
5UQ8|1|A|A|2561
5UQ8|1|A|U|2562
5UQ8|1|A|U|2563
5UQ8|1|A|A|2564
5UQ8|1|A|A|2565
5UQ8|1|A|A|2566
5UQ8|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L13

Chain O

50S ribosomal protein L14