J3_5UQ8_032

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_032 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0748

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|G|1424
5UQ8|1|A|G|1425
5UQ8|1|A|G|1426
5UQ8|1|A|A|1427
5UQ8|1|A|C|1428
5UQ8|1|A|G|1429
*
5UQ8|1|A|C|1564
5UQ8|1|A|C|1565
*
5UQ8|1|A|G|1568
5UQ8|1|A|A|1569
5UQ8|1|A|A|1570
5UQ8|1|A|A|1571
5UQ8|1|A|A|1572
5UQ8|1|A|G|1573
5UQ8|1|A|C|1574

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2