J3_5UQ8_035

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5UQ8|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UQ8_035 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1577

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

5UQ8|1|a|C|990
5UQ8|1|a|U|991
5UQ8|1|a|U|992
5UQ8|1|a|G|993
5UQ8|1|a|A|994
5UQ8|1|a|C|995
5UQ8|1|a|A|996
5UQ8|1|a|U|997
*
5UQ8|1|a|A|1044
5UQ8|1|a|C|1045
5UQ8|1|a|A|1046
5UQ8|1|a|G|1047
*
5UQ8|1|a|C|1210
5UQ8|1|a|U|1211
5UQ8|1|a|U|1212
5UQ8|1|a|A|1213
5UQ8|1|a|C|1214
5UQ8|1|a|G|1215

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z