3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CGGAAG*CAG*CAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYK_006 not in the Motif Atlas
Homologous match to J3_5J7L_041
Geometric discrepancy: 0.1612
The information below is about J3_5J7L_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

5UYK|1|01|C|1298
5UYK|1|01|G|1299
5UYK|1|01|G|1300
5UYK|1|01|A|1301
5UYK|1|01|A|1302
5UYK|1|01|G|1303
*
5UYK|1|01|C|1625
5UYK|1|01|A|1626
5UYK|1|01|G|1627
*
5UYK|1|01|C|1639
5UYK|1|01|A|1640
5UYK|1|01|A|1641
5UYK|1|01|G|1642

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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