J3_5UYK_006

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYK_006 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1612

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UYK|1|01|C|1298
5UYK|1|01|G|1299
5UYK|1|01|G|1300
5UYK|1|01|A|1301
5UYK|1|01|A|1302
5UYK|1|01|G|1303
*
5UYK|1|01|C|1625
5UYK|1|01|A|1626
5UYK|1|01|G|1627
*
5UYK|1|01|C|1639
5UYK|1|01|A|1640
5UYK|1|01|A|1641
5UYK|1|01|G|1642

Current chains

Chain 01

23S ribosomal RNA

Nearby chains