3D structure

PDB id
5UYK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYK_030 not in the Motif Atlas
Homologous match to J3_5J7L_069
Geometric discrepancy: 0.1149
The information below is about J3_5J7L_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5UYK|1|01|G|1424
5UYK|1|01|G|1425
5UYK|1|01|G|1426
5UYK|1|01|A|1427
5UYK|1|01|C|1428
5UYK|1|01|G|1429
*
5UYK|1|01|C|1564
5UYK|1|01|C|1565
*
5UYK|1|01|G|1568
5UYK|1|01|A|1569
5UYK|1|01|A|1570
5UYK|1|01|A|1571
5UYK|1|01|A|1572
5UYK|1|01|G|1573
5UYK|1|01|C|1574

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 04
50S ribosomal protein L2

Coloring options:


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