J3_5UYL_036

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5UYL|1|A|U|1212, 5UYL|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYL_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1527

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5UYL|1|A|C|990
5UYL|1|A|U|991
5UYL|1|A|U|992
5UYL|1|A|G|993
5UYL|1|A|A|994
5UYL|1|A|C|995
5UYL|1|A|A|996
5UYL|1|A|U|997
*
5UYL|1|A|A|1044
5UYL|1|A|C|1045
5UYL|1|A|A|1046
5UYL|1|A|G|1047
*
5UYL|1|A|C|1210
5UYL|1|A|U|1211
5UYL|1|A|U|1212
5UYL|1|A|A|1213
5UYL|1|A|C|1214
5UYL|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14