3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
5UYM|1|A|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UYM_018 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.0769
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

5UYM|1|A|C|826
5UYM|1|A|U|827
5UYM|1|A|U|828
5UYM|1|A|G|829
*
5UYM|1|A|C|857
5UYM|1|A|G|858
5UYM|1|A|G|859
5UYM|1|A|A|860
5UYM|1|A|G|861
*
5UYM|1|A|C|868
5UYM|1|A|G|869
5UYM|1|A|U|870
5UYM|1|A|U|871
5UYM|1|A|A|872
5UYM|1|A|A|873
5UYM|1|A|G|874

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain H
30S ribosomal protein S8
Chain U
30S ribosomal protein S21

Coloring options:


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