J3_5UYN_005

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5UYN_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2515

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

5UYN|1|01|G|1055
5UYN|1|01|G|1056
5UYN|1|01|A|1057
*
5UYN|1|01|U|1081
5UYN|1|01|U|1082
5UYN|1|01|U|1083
5UYN|1|01|A|1084
5UYN|1|01|A|1085
5UYN|1|01|A|1086
5UYN|1|01|G|1087
*
5UYN|1|01|C|1102
5UYN|1|01|A|1103
5UYN|1|01|C|1104

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 10

50S ribosomal protein L10

Chain 11

50S ribosomal protein L11

Chain 34

50S ribosomal protein L36