J3_5UYN_028
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5UYN|1|01|A|504, 5UYN|1|01|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5UYN_028 not in the Motif Atlas
- Homologous match to J3_5J7L_066
- Geometric discrepancy: 0.1244
- The information below is about J3_5J7L_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5UYN|1|01|G|30
5UYN|1|01|C|31
*
5UYN|1|01|G|474
5UYN|1|01|C|475
5UYN|1|01|G|476
5UYN|1|01|A|477
5UYN|1|01|A|478
5UYN|1|01|A|479
5UYN|1|01|A|480
5UYN|1|01|G|481
5UYN|1|01|A|482
5UYN|1|01|A|483
5UYN|1|01|C|484
*
5UYN|1|01|G|496
5UYN|1|01|A|497
5UYN|1|01|G|498
5UYN|1|01|U|499
5UYN|1|01|G|500
5UYN|1|01|A|501
5UYN|1|01|A|502
5UYN|1|01|A|503
5UYN|1|01|A|504
5UYN|1|01|A|505
5UYN|1|01|G|506
5UYN|1|01|A|507
5UYN|1|01|A|508
5UYN|1|01|C|509
5UYN|1|01|C|510
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L20
- Chain 21
- 50S ribosomal protein L22
- Chain 23
- 50S ribosomal protein L24
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