3D structure

PDB id
5UZ4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of YjeQ bound to the 30S subunit suggests a fidelity checkpoint function for this protein in ribosome assembly
Experimental method
ELECTRON MICROSCOPY
Resolution
5.8 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
5UZ4|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5UZ4_003 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1887
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

5UZ4|1|A|U|672
5UZ4|1|A|A|673
*
5UZ4|1|A|U|717
5UZ4|1|A|A|718
5UZ4|1|A|C|719
5UZ4|1|A|C|720
5UZ4|1|A|G|721
5UZ4|1|A|G|722
5UZ4|1|A|U|723
5UZ4|1|A|G|724
5UZ4|1|A|G|725
*
5UZ4|1|A|C|732
5UZ4|1|A|G|733
5UZ4|1|A|G|734

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain F
30S ribosomal protein S6
Chain K
30S ribosomal protein S11
Chain O
30S ribosomal protein S15
Chain R
30S ribosomal protein S18

Coloring options:


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