J3_5V7Q_002
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 5V7Q|1|A|U|815, 5V7Q|1|A|A|921, 5V7Q|1|A|A|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5V7Q_002 not in the Motif Atlas
- Homologous match to J3_4WF9_002
- Geometric discrepancy: 0.1738
- The information below is about J3_4WF9_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.3
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
5V7Q|1|A|U|812
5V7Q|1|A|G|813
5V7Q|1|A|A|814
5V7Q|1|A|U|815
5V7Q|1|A|C|816
5V7Q|1|A|U|817
5V7Q|1|A|A|818
*
5V7Q|1|A|U|902
5V7Q|1|A|A|903
5V7Q|1|A|G|904
*
5V7Q|1|A|C|920
5V7Q|1|A|A|921
5V7Q|1|A|A|922
5V7Q|1|A|A|923
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
Coloring options: